RNN to model DNA sequencing classification
I have a DNA sequence dataset each mapped to a certain class. e,g
TCAGCCGAGAGCTCATCGATCGTACGT 2
ATGCAGTGCATCGATCGATCGTAGAAC 3
Where the number after the sequence specifies the type of protein this sequence belongs to.
So my question can I use KMers and 1-HOT-Coding to classify these sequences through biLSTM.
Or this is not a possible concept and I would appreciate your feedback and suggestions on this task as I am new to Deep Learning.
Thank you.
Topic sequence-to-sequence gru lstm rnn deep-learning
Category Data Science